Jessica Andreani's Webpage

Publications

Chloé Quignot, Julien Rey, Jinchao Yu, Pierre Tufféry, Raphaël Guerois, Jessica Andreani. InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs. Nucleic Acids Research. (), gky377 (2018),[DOI] [bibtex]

@article{quignot-18,
  author = {Quignot, Chlo\'e and Rey, Julien and Yu, Jinchao and Tuff\'ery, Pierre and Guerois, Rapha\"{e}l and Andreani, Jessica},
  title = {InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs},
  journal = {Nucleic Acids Research},
  volume = {},
  number = {},
  pages = {gky377},
  year = {2018},
  doi = {10.1093/nar/gky377},
  url = {http://dx.doi.org/10.1093/nar/gky377},
}

Aravindan Arun Nadaradjane, Raphael Guerois, Jessica Andreani. Protein-Protein Docking Using Evolutionary Information. In "Protein Complex Assembly: Methods and Protocols". Springer New York. 429--447 (2018),[DOI] [bibtex]

@inbook{Nadaradjane2018,
  author = {Nadaradjane, Aravindan Arun and Guerois, Raphael and Andreani, Jessica},
  editor = {Marsh, Joseph A.},
  title = {Protein-Protein Docking Using Evolutionary Information},
  booktitle = {Protein Complex Assembly: Methods and Protocols},
  year = {2018},
  publisher = {Springer New York},
  address = {New York, NY},
  pages = {429--447},
  isbn = {978-1-4939-7759-8},
  doi = {10.1007/978-1-4939-7759-8_28},
  url = {https://doi.org/10.1007/978-1-4939-7759-8_28},
}

Arnaud De Muyt, Alexandra Pyatnitskaya, Jessica Andreani, Lepakshi Ranjha, Claire Ramus, Raphaëlle Laureau, Ambra Fernandez-Vega, Daniel Holoch, Elodie Girard, Jérome Govin, Raphaël Margueron, Yohann Couté, Petr Cejka, Raphaël Guerois, Valérie Borde. A meiotic XPF-ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation. Genes & Development. (2018),[DOI] [bibtex]

@article{demuy-18,
  author = {De Muyt, Arnaud and Pyatnitskaya, Alexandra and Andreani, Jessica and Ranjha, Lepakshi and Ramus, Claire and Laureau, Rapha\"{e}lle and Fernandez-Vega, Ambra and Holoch, Daniel and Girard, Elodie and Govin, J\'{e}rome and Margueron, Rapha\"{e}l and Cout\'{e}, Yohann and Cejka, Petr and Guerois, Rapha\"{e}l and Borde, Val\'{e}rie},
  title = {A meiotic XPF-ERCC1-like complex recognizes joint molecule recombination intermediates to promote crossover formation},
  year = {2018},
  doi = {10.1101/gad.308510.117},
  url = {http://genesdev.cshlp.org/content/early/2018/02/09/gad.308510.117.abstract},
  eprint = {http://genesdev.cshlp.org/content/early/2018/02/09/gad.308510.117.full.pdf+html},
  journal = {Genes \& Development},
}

The Quyen Nguyen, Mélanie Chenon, Fernando Vilela, Christophe Velours, Magali Aumont-Nicaise, Jessica Andreani, Paloma F. Varela, Paola Llinas^#, Julie Ménétrey^#. Structural plasticity of the N-terminal capping helix of the TPR domain of kinesin light chain. PLOS One. 12(10) (2017),[DOI] [bibtex]

@article{nguyen-17,
  author = {The Quyen Nguyen AND M\'elanie Chenon AND Fernando Vilela AND Christophe Velours AND Magali Aumont-Nicaise AND Jessica Andreani AND Paloma F. Varela AND Paola Llinas\textsuperscript{\#} AND Julie M\'en\'etrey\textsuperscript{\#}},
  journal = {PLOS One},
  title = {Structural plasticity of the N-terminal capping helix of the TPR domain of kinesin light chain},
  year = {2017},
  month = {10},
  volume = {12},
  number = {10},
  doi = {10.1371/journal.pone.0186354},
  url = {https://doi.org/10.1371/journal.pone.0186354},
}

Aurélie Méneret, Elizabeth A. Franz, Oriane Trouillard, Thomas C. Oliver, Yvrick Zagar, Stephen P. Robertson, Quentin Welniarz, R.J. MacKinlay Gardner, Cécile Gallea, Myriam Srour, Christel Depienne, Christine L. Jasoni, Caroline Dubacq, Florence Riant, Jean-Charles Lamy, Marie-Pierre Morel, Raphael Guérois, Jessica Andreani, Coralie Fouquet, Mohamed Doulazmi, Marie Vidailhet, Guy A. Rouleau, Alexis Brice, Alain Chédotal, Isabelle Dusart, Emmanuel Roze, David Markie. Mutations in the netrin-1 gene cause congenital mirror movements. The Journal of Clinical Investigation. 127(11) (2017),[DOI] [bibtex]

@article{meneret-17,
  author = {Aur\'elie M\'eneret AND Elizabeth A. Franz AND Oriane Trouillard AND Thomas C. Oliver AND Yvrick Zagar AND Stephen P. Robertson AND Quentin Welniarz AND R.J. MacKinlay Gardner AND C\'ecile Gallea AND Myriam Srour AND Christel Depienne AND Christine L. Jasoni AND Caroline Dubacq AND Florence Riant AND Jean-Charles Lamy AND Marie-Pierre Morel AND Raphael Gu\'erois AND Jessica Andreani AND Coralie Fouquet AND Mohamed Doulazmi AND Marie Vidailhet AND Guy A. Rouleau AND Alexis Brice AND Alain Ch\'edotal AND Isabelle Dusart AND Emmanuel Roze AND David Markie},
  journal = {The Journal of Clinical Investigation},
  title = {Mutations in the netrin-1 gene cause congenital mirror movements},
  year = {2017},
  month = {9},
  volume = {127},
  url = {https://doi.org/10.1172/JCI95442},
  number = {11},
  doi = {10.1172/JCI95442},
  url = {https://doi.org/10.1172/JCI95442},
}

Carlo Baejen*, Jessica Andreani*, Phillipp Torkler, Sofia Battaglia, Bjoern Schwalb, Michael Lidschreiber, Kerstin C Maier, Andrea Boltendahl, Petra Rus, Stephanie Esslinger, Johannes Söding^#, Patrick Cramer^#. Genome-wide Analysis of RNA Polymerase II Termination at Protein-Coding Genes. Molecular Cell. 66(1), 38-49.e6 (2017),[DOI] [bibtex]

@article{baejen-17,
  title = {Genome-wide Analysis of RNA Polymerase II Termination at Protein-Coding Genes},
  author = {Baejen*, Carlo and Andreani*, Jessica and Torkler, Phillipp and Battaglia, Sofia and Schwalb, Bjoern and Lidschreiber, Michael and Maier, Kerstin C and Boltendahl, Andrea and Rus, Petra and Esslinger, Stephanie and S\"oding\textsuperscript{\#}, Johannes and Cramer\textsuperscript{\#}, Patrick},
  journal = {Molecular Cell},
  year = {2017},
  doi = {10.1016/j.molcel.2017.02.009},
  volume = {66},
  number = {1},
  pages = {38-49.e6},
}

Jinchao Yu, Jessica Andreani, Francoise Ochsenbein, Raphaël Guerois. Lessons from (co-)evolution in the docking of proteins and peptides for CAPRI Rounds 28-35. Proteins. 85(3), 378-390 (2016),[DOI] [bibtex]

@article{yu-16b,
  author = {Yu, Jinchao and Andreani, Jessica and Ochsenbein, Francoise and Guerois, Rapha\"el},
  title = {Lessons from \(co-\)evolution in the docking of proteins and peptides for CAPRI Rounds 28-35},
  volume = {85},
  number = {3},
  pages = {378-390},
  year = {2016},
  doi = {10.1002/prot.25180},
  url = {http://onlinelibrary.wiley.com/doi/10.1002/prot.25180},
  journal = {Proteins},
}

Jinchao Yu, Marek Vavrusa, Jessica Andreani, Julien Rey, Pierre Tufféry^#, Raphaël Guerois^#. InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information. Nucleic Acids Research. 44(W1), W542-W549 (2016),[DOI] [bibtex]

@article{yu-16,
  author = {Yu, Jinchao and Vavrusa, Marek and Andreani, Jessica and Rey, Julien and Tuff\'ery\textsuperscript{\#}, Pierre and Guerois\textsuperscript{\#}, Rapha\"el},
  title = {InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information},
  volume = {44},
  number = {W1},
  pages = {W542-W549},
  year = {2016},
  doi = {10.1093/nar/gkw340},
  url = {http://nar.oxfordjournals.org/content/44/W1/W542.abstract},
  eprint = {http://nar.oxfordjournals.org/content/44/W1/W542.full.pdf+html},
  journal = {Nucleic Acids Research},
}

Jessica Andreani^#, Johannes Söding^#. bbcontacts: prediction of β-strand pairing from direct coupling patterns. Bioinformatics. 31(11), 1729-1737 (2015),[DOI] [bibtex]

@article{andreani-15,
  author = {Andreani\textsuperscript{\#}, Jessica and S\"oding\textsuperscript{\#}, Johannes},
  title = {bbcontacts: prediction of $\beta$-strand pairing from direct coupling patterns},
  volume = {31},
  number = {11},
  pages = {1729-1737},
  year = {2015},
  doi = {10.1093/bioinformatics/btv041},
  url = {http://bioinformatics.oxfordjournals.org/content/early/2015/01/22/bioinformatics.btv041.abstract},
  journal = {Bioinformatics},
}

Stephan Wickles, Abhishek Singharoy, Jessica Andreani, Stefan Seemayer, Lukas Bischoff, Otto Berninghausen, Johannes Soeding, Klaus Schulten, Eli van der Sluis, Roland Beckmann. A structural model of the active ribosome-bound membrane protein insertase YidC. eLife. 3, e03035 (2014),[DOI] [bibtex]

@article{wickles-14,
  author = {Wickles, Stephan and Singharoy, Abhishek and Andreani, Jessica and Seemayer, Stefan and Bischoff, Lukas and Berninghausen, Otto and Soeding, Johannes and Schulten, Klaus and van der Sluis, Eli and Beckmann, Roland},
  title = {A structural model of the active ribosome-bound membrane protein insertase YidC},
  volume = {3},
  pages = {e03035},
  year = {2014},
  doi = {10.7554/eLife.03035},
  isbn = {2050-084X},
  url = {http://elifesciences.org/content/early/2014/07/09/eLife.03035},
  journal = {eLife},
}

Jessica Andreani^#, Raphael Guerois^#. Evolution of Protein Interactions: From Interactomes to Interfaces. Archives of Biochemistry and Biophysics. 554, 65-75 (2014),[DOI] [bibtex]

@article{andreani-14,
  author = {Andreani\textsuperscript{\#}, Jessica and Guerois\textsuperscript{\#}, Raphael},
  title = {Evolution of Protein Interactions: From Interactomes to Interfaces},
  year = {2014},
  volume = {554},
  pages = {65-75},
  doi = {10.1016/j.abb.2014.05.010},
  url = {http://www.sciencedirect.com/science/article/pii/S0003986114001593},
  journal = {Archives of Biochemistry and Biophysics},
}

Johnny Lisboa*, Jessica Andreani*, Dyana Sanchez, Marion Boudes, Bruno Collinet, Dominique Liger, Herman van Tilbeurgh, Raphael Guerois^#, Sophie Quevillon-Cheruel^#. Molecular determinants of the DprA-RecA interaction for nucleation on ssDNA. Nucleic Acids Research. 42(11), 7395-7408 (2014),[DOI] [bibtex]

@article{lisboa-14,
  author = {Lisboa*, Johnny and Andreani*, Jessica and Sanchez, Dyana and Boudes, Marion and Collinet, Bruno and Liger, Dominique and Tilbeurgh, Herman van and Guerois\textsuperscript{\#}, Raphael and Quevillon-Cheruel\textsuperscript{\#}, Sophie},
  title = {Molecular determinants of the DprA-RecA interaction for nucleation on ssDNA},
  year = {2014},
  volume = {42},
  number = {11},
  pages = {7395-7408},
  doi = {10.1093/nar/gku349},
  url = {http://nar.oxfordjournals.org/content/early/2014/04/29/nar.gku349.abstract},
  eprint = {http://nar.oxfordjournals.org/content/early/2014/04/29/nar.gku349.full.pdf+html},
  journal = {Nucleic Acids Research},
}

Charlotte Lombardi, Maya Ayach, Lionel Beaurepaire, Mélanie Chenon, Jessica Andreani, Raphaël Guerois, Isabelle Jupin, Stéphane Bressanelli. A compact viral processing proteinase / ubiquitin hydrolase from the OTU family. PLoS Pathogens. 9(8), e1003560 (2013),[DOI] [bibtex]

@article{lombardi-13,
  author = {Lombardi, Charlotte and Ayach, Maya and Beaurepaire, Lionel and Chenon, M\'elanie and Andreani, Jessica and Guerois, Rapha\"el and Jupin, Isabelle and Bressanelli, St\'ephane},
  title = {{A compact viral processing proteinase / ubiquitin hydrolase from the OTU family}},
  journal = {PLoS Pathogens},
  volume = {9},
  number = {8},
  pages = {e1003560},
  year = {2013},
  doi = {10.1371/journal.ppat.1003560},
}

Jessica Andreani, Guilhem Faure, Raphaël Guerois. InterEvScore: a novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution. Bioinformatics. 29(14), 1742-1749 (2013),[DOI] [bibtex]

@article{andreani-13,
  author = {Andreani, Jessica and Faure, Guilhem and Guerois, Rapha\"el},
  title = {{InterEvScore: a novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution}},
  journal = {Bioinformatics},
  year = {2013},
  volume = {29},
  number = {14},
  pages = {1742-1749},
  doi = {10.1093/bioinformatics/btt260},
}

Jessica Andreani, Guilhem Faure, Raphaël Guerois. Versatility and Invariance in the Evolution of Homologous Heteromeric Interfaces. PLoS Comput Biol. 8(8), e1002677+ (2012),[DOI] [bibtex]

@article{andreani-12,
  author = {Andreani, Jessica and Faure, Guilhem and Guerois, Rapha\"el},
  title = {{Versatility and Invariance in the Evolution of Homologous Heteromeric Interfaces}},
  journal = {PLoS Comput Biol},
  year = {2012},
  month = {aug},
  volume = {8},
  number = {8},
  pages = {e1002677+},
  doi = {10.1371/journal.pcbi.1002677},
}

Guilhem Faure, Jessica Andreani, Raphaël Guerois. InterEvol database: exploring the structure and evolution of protein complex interfaces. Nucleic Acids Research. 40(D1), 847-856 (2012),[DOI] [bibtex]

@article{faure-12,
  author = {Faure, Guilhem and Andreani, Jessica and Guerois, Rapha\"el},
  title = {{InterEvol database: exploring the structure and evolution of protein complex interfaces}},
  journal = {Nucleic Acids Research},
  volume = {40},
  number = {D1},
  pages = {847-856},
  year = {2012},
  doi = {10.1093/nar/gkr845},
}

* equal contribution
^# co-corresponding authors